1. ChIPpeakAnno::ExonPlusUtr.human.GRCh37
    Gene model with exon, 5' UTR and 3' UTR information for human sapiens (GRCh37) obtained from biomaRt
    rda| rds
    GRanges
  2. ChIPpeakAnno::HOT.spots
    High Occupancy of Transcription Related Factors regions
    rda| rds
    CompressedGRangesList
  3. ChIPpeakAnno::Peaks.Ste12.Replicate1
    Ste12-binding sites from biological replicate 1 in yeast (see reference)
    rda| rds
    GRanges
  4. ChIPpeakAnno::Peaks.Ste12.Replicate2
    Ste12-binding sites from biological replicate 2 in yeast (see reference)
    rda| rds
    GRanges
  5. ChIPpeakAnno::Peaks.Ste12.Replicate3
    Ste12-binding sites from biological replicate 3 in yeast (see reference)
    rda| rds
    GRanges
  6. ChIPpeakAnno::TSS.human.GRCh37
    TSS annotation for human sapiens (GRCh37) obtained from biomaRt
    rda| rds
    GRanges
  7. ChIPpeakAnno::TSS.human.GRCh38
    TSS annotation for human sapiens (GRCh38) obtained from biomaRt
    rda| rds
    GRanges
  8. ChIPpeakAnno::TSS.human.NCBI36
    TSS annotation for human sapiens (NCBI36) obtained from biomaRt
    rda| rds
    GRanges
  9. ChIPpeakAnno::TSS.mouse.GRCm38
    TSS annotation data for Mus musculus (GRCm38.p1) obtained from biomaRt
    rda| rds
    GRanges
  10. ChIPpeakAnno::TSS.mouse.NCBIM37
    TSS annotation data for mouse (NCBIM37) obtained from biomaRt
    rda| rds
    GRanges
  11. ChIPpeakAnno::TSS.rat.RGSC3.4
    TSS annotation data for rat (RGSC3.4) obtained from biomaRt
    rda| rds
    GRanges
  12. ChIPpeakAnno::TSS.rat.Rnor_5.0
    TSS annotation data for Rattus norvegicus (Rnor_5.0) obtained from biomaRt
    rda| rds
    GRanges
  13. ChIPpeakAnno::TSS.zebrafish.Zv8
    TSS annotation data for zebrafish (Zv8) obtained from biomaRt
    rda| rds
    GRanges
  14. ChIPpeakAnno::TSS.zebrafish.Zv9
    TSS annotation for Danio rerio (Zv9) obtained from biomaRt
    rda| rds
    GRanges
  15. ChIPpeakAnno::annotatedPeak
    Annotated Peaks
    rda| rds
    GRanges
  16. ChIPpeakAnno::enrichedGO
    Enriched Gene Ontology terms used as example
    json| rda| rds
    list
  17. ChIPpeakAnno::myPeakList
    An example GRanges object representing a ChIP-seq peak dataset
    rda| rds
    GRanges
  18. ChIPpeakAnno::peaks1
    An example GRanges object representing a ChIP-seq peak dataset
    rda| rds
    GRanges
  19. ChIPpeakAnno::peaks2
    An example GRanges object representing a ChIP-seq peak dataset
    rda| rds
    GRanges
  20. ChIPpeakAnno::peaks3
    An example GRanges object representing a ChIP-seq peak dataset
    rda| rds
    GRanges
  21. ChIPpeakAnno::wgEncodeTfbsV3
    transcription factor binding site clusters (V3) from ENCODE
    rda| rds
    GRanges
  22. cleanUpdTSeq::classifier
    NaiveBayes classifier
    rda| rds
    PASclassifier
  23. cleanUpdTSeq::data.NaiveBayes
    Training Data
    json| rda| rds
    list
  24. dagLogo::ecoli.proteome
    An object of 'Proteome-class' representing the _Escherichia coli_ proteome.
    rda| rds
    Proteome
  25. dagLogo::proteome.example
    An object of 'Proteome-class' representing the subset of _Drosophila melanogaster_ proteome.
    rda| rds
    Proteome
  26. dagLogo::seq.example
    An object of 'dagPeptides-class' representing acetylated lysine-containing peptides.
    rda| rds
    dagPeptides
  27. GeneNetworkBuilder::ce.IDsMap
    C.elegns gene name to wormbase identifier map
    json| rda| rds
    character
  28. GeneNetworkBuilder::ce.interactionmap
    transcript regulatory map of _Caenorhabditis elegans_
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100633 x 2
  29. GeneNetworkBuilder::ce.mapIDs
    map file for converting from wormbase identifier to _Caenorhabditis elegans_ gene name
    json| rda| rds
    character
  30. GeneNetworkBuilder::ce.miRNA.map
    micro RNA of _Caenorhabditis elegans_
    csv| xlsx| json| ndjson| rda| rds
    data.frame|214 x 2
  31. GeneNetworkBuilder::example.data
    example datasets for documentation
    json| rda| rds
    list
  32. GeneNetworkBuilder::hs.IDsMap
    map file for converting gene name or sequence name of _Homo sapiens_ to Entrez identifier
    json| rda| rds
    character
  33. GeneNetworkBuilder::hs.interactionmap
    transcript regulation map of _Homo sapiens_
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500597 x 2
  34. GeneNetworkBuilder::hs.mapIDs
    map file for converting from Entrez identifier to _Homo sapiens_ gene name
    json| rda| rds
    character
  35. GeneNetworkBuilder::hs.miRNA.map
    micro RNA of _Homo sapiens_
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1564 x 2
  36. InPAS::utr3.mm10
    Annotation of 3' UTRs for mouse (mm10)
    rda| rds
    GRanges
  37. NADfinder::single.count
    Counts data for chromosome 18 for an experiment of a single pair of samples
    rda| rds
    RangedSummarizedExperiment
  38. NADfinder::triplicate.count
    Counts data for chromosome 18 for an expriment with triplicates
    rda| rds
    RangedSummarizedExperiment